species:   Rhsol
pid:       PID0498
parent:    Rhi-milR-114
paralog:   
locus:     KB317831.1:15754-15831
matures:   ['UAUGUGUGACAUCUGAAGGAAG', 'UGCUUGUUGAAGCAGAGUCUAUUGUGCAAU']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317831.1:15754-15831

51 out of bounds
49 alignments
28 proper strand
27 stranded perfect matches

        *************************    *********************************        
CAGGGUGGAGUAUGUGUGACAUCUGAAGGAAGUCUUGUCUUGCUUGUUGAAGCAGAGUCUAUUGUGCAAUCUAGCCAA
..((.(((((((((...(((.(((((((.(((......))).))).......)))))))...)))))..)))).))..
----------UAUGUGUGACAUCUGAAGGAAG---------------------------------------------- l=22 a=1 c
----------------------------------------UGCUUGUUGAAGCAGAGUCUAUUGUGCAAU-------- l=30 a=0 c*
----------UAUGUGUGACAUCUGAAGGAAGU--------------------------------------------- l=23 a=15 ma
---------------------------------------UUGCUUGUUGAAGCAGAGUCUAUUGUGCAAU-------- l=31 a=0 ma*

-----UGGAGUAUGUGUGACAUCUGAAGG------------------------------------------------- l=24 a=2 
--------AGUAUGUGUGACAUCUGAAGGAAGU--------------------------------------------- l=25 a=1 
----------UAUGUGUGACAUCUGAAGG------------------------------------------------- l=19 a=1 
----------UAUGUGUGACAUCUGAAGGA------------------------------------------------ l=20 a=1 
----------UAUGUGUGACAUCUGAAGGAAG---------------------------------------------- l=22 a=1 (c)
----------UAUGUGUGACAUCUGAAGGAAGU--------------------------------------------- l=23 a=15 (ma)
----------UAUGUGUGACgUCUGAAGGAAGU--------------------------------------------- l=23 a=1 
----------UAUGUGUGACAUCUGAAGGAAGUC-------------------------------------------- l=24 a=2 
------------UGUGUGACAUCUGAAGGAAGU--------------------------------------------- l=21 a=1 
------------UGUGUGACAUCUGAAGGAAGUC-------------------------------------------- l=22 a=2 
--------------------------------------------UGUUGAAGCAGAGUCUAUUGUG------------ l=22 a=1 

mb-00111
ax-1001011
ku-01
ss-111110101000
fn-101
